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LARTS Online GenBank example for aminotransferase

<?xml version="1.0" encoding="UTF-8"?>

<Bioseq-set>
<class>
<not-set/>
</class>
<seq-set>
<Seq-entry>
<set>
<class>
<nuc-prot/>
</class>
<descr>
<Seqdesc>
<source>
<genome>
<genomic/>
</genome>
<origin>
<unknown/>
</origin>
<org>
<taxname>Gulo gulo</taxname>
<common>wolverine</common>
<db>
<Dbtag>
<db>taxon</db>
<tag>
<id>48420</id>
</tag>
</Dbtag>
</db>
<orgname>
<name>
<binomial>
<genus>Gulo</genus>
<species>gulo</species>
</binomial>
</name>
<lineage>Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Mustelidae; Mustelinae; Gulo</lineage>
<gcode>1</gcode>
<mgcode>2</mgcode>
<div>MAM</div>
</orgname>
</org>
<subtype>
<SubSource>
<subtype>
<country/>
</subtype>
<name>Sweden</name>
</SubSource>
</subtype>
</source>
</Seqdesc>
<Seqdesc>
<pub>
<pub>
<Pub>
<article>
<title>
<CHOICE>
<name>To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations?</name>
</CHOICE>
</title>
<authors>
<names>
<std>
<Author>
<name>
<name>
<last>Vali</last>
<first>U</first>
<initials>U.</initials>
</name>
</name>
</Author>
<Author>
<name>
<name>
<last>Einarsson</last>
<first>A</first>
<initials>A.</initials>
</name>
</name>
</Author>
<Author>
<name>
<name>
<last>Waits</last>
<first>L</first>
<initials>L.</initials>
</name>
</name>
</Author>
<Author>
<name>
<name>
<last>Ellegren</last>
<first>H</first>
<initials>H.</initials>
</name>
</name>
</Author>
</std>
</names>
<affil>
<str>Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Norbyvagen 18D, SE-752 36, Uppsala, Sweden.</str>
</affil>
</authors>
<from>
<journal>
<title>
<CHOICE>
<iso-jta>Mol. Ecol.</iso-jta>
</CHOICE>
</title>
<imp>
<date>
<std>
<year>2008</year>
<month>7</month>
<day>18</day>
</std>
</date>
<volume>17</volume>
<pages>3808-3817</pages>
<language>ENG</language>
<pubstatus>
<epublish/>
</pubstatus>
</imp>
</journal>
</from>
</article>
</Pub>
<Pub>
<pmid>18647238</pmid>
</Pub>
</pub>
<reftype>
<seq/>
</reftype>
</pub>
</Seqdesc>
<Seqdesc>
<pub>
<pub>
<Pub>
<sub>
<authors>
<names>
<std>
<Author>
<name>
<name>
<last>Vali</last>
<first>Ulo</first>
<initials>U.</initials>
</name>
</name>
</Author>
<Author>
<name>
<name>
<last>Einarsson</last>
<first>Annika</first>
<initials>A.</initials>
</name>
</name>
</Author>
<Author>
<name>
<name>
<last>Waits</last>
<first>Lisette</first>
<initials>L.</initials>
</name>
</name>
</Author>
<Author>
<name>
<name>
<last>Ellegren</last>
<first>Hans</first>
<initials>H.</initials>
</name>
</name>
</Author>
</std>
</names>
<affil>
<std>
<affil>Uppsala University</affil>
<div>Department of Evolutionary Biology</div>
<city>Uppsala</city>
<country>Sweden</country>
<street>Norbyvagen 18D</street>
<postal-code>75236</postal-code>
</std>
</affil>
</authors>
<date>
<std>
<year>2008</year>
<month>7</month>
<day>4</day>
</std>
</date>
</sub>
</Pub>
</pub>
<reftype>
<seq/>
</reftype>
</pub>
</Seqdesc>
<Seqdesc>
<update-date>
<std>
<year>2008</year>
<month>8</month>
<day>26</day>
</std>
</update-date>
</Seqdesc>
</descr>
<seq-set>
<Seq-entry>
<seq>
<id>
<Seq-id>
<genbank>
<accession>EU871618</accession>
<version>1</version>
</genbank>
</Seq-id>
<Seq-id>
<gi>197292134</gi>
</Seq-id>
</id>
<descr>
<Seqdesc>
<molinfo>
<biomol>
<genomic/>
</biomol>
<tech>
<unknown/>
</tech>
<completeness>
<unknown/>
</completeness>
</molinfo>
</Seqdesc>
<Seqdesc>
<title>Gulo gulo tyrosine aminotransferase gene, partial cds.</title>
</Seqdesc>
<Seqdesc>
<genbank>
<keywords>
<VisibleString>GDS</VisibleString>
</keywords>
</genbank>
</Seqdesc>
<Seqdesc>
<create-date>
<std>
<year>2008</year>
<month>8</month>
<day>26</day>
</std>
</create-date>
</Seqdesc>
</descr>
<inst>
<repr>
<raw/>
</repr>
<mol>
<dna/>
</mol>
<length>622</length>
<topology>
<linear/>
</topology>
<seq-data>
<iupacna>GAGACGAGGTAAGAACAATTTGGTGAATGGTACTTCTAATTTAGTATATATGTATATATTTACTTTGCACGCAGTGGTTAGGAGGTGATTTTTGTTGTTGTTGTAGTGTTTTTTTTTTTCCCCCTTCTCCTTGGTCCTGTAGTTCTGGGTGCCTGGAAAAATGCTGGTAAAGAGGGTACTAGTTATTCCTTTCCAAAACTCGGTTTTCCTGTACCTGGCTCTGTGAAGAAGTTCCATCCGCCTCTAGTTTTCAGACTGCAAAAAGGCAAACAATAGCGGTAATGATCCCTGGTATTATTTGGAGGCTTACGATGTGCCAACGTTCAAAATACATCATTTTAATTTAATCCTCCCTGCAACCCGATGAGGCCAGGATTAGTATCATCTACCTTTTATGGCTGAGAAAAGTGAGGCACTAAGACGTTGTATCATTTGCCCAGAGTCATACCGGAGGTATGTGACAGAGCTGGGCTAAAACCCAAGTGGTCTAATCCAAGAATGCCACTAGGCACCATCACTTCTTCAGAGATGTAAAGCCTGATGAAAAGAATGGTCAGAACAAGAATCCCCAAACTGGAATGCTTAAGGAAGGCTAAATAATCTGTTTGCCGGGGCACTTTAG</iupacna>
</seq-data>
</inst>
<annot>
<Seq-annot>
<data>
<ftable>
<Seq-feat>
<data>
<imp>
<key>intron</key>
</imp>
</data>
<partial>true</partial>
<comment>putative intron 9</comment>
<location>
<int>
<from>8</from>
<to>621</to>
<strand>
<plus/>
</strand>
<id>
<gi>197292134</gi>
</id>
<fuzz-to>
<lim>
<gt/>
</lim>
</fuzz-to>
</int>
</location>
</Seq-feat>
<Seq-feat>
<data>
<rna>
<type>
<mRNA/>
</type>
<ext>
<name>tyrosine aminotransferase</name>
</ext>
</rna>
</data>
<partial>true</partial>
<location>
<int>
<from>0</from>
<to>7</to>
<strand>
<plus/>
</strand>
<id>
<gi>197292134</gi>
</id>
<fuzz-from>
<lim>
<lt/>
</lim>
</fuzz-from>
<fuzz-to>
<lim>
<gt/>
</lim>
</fuzz-to>
</int>
</location>
</Seq-feat>
</ftable>
</data>
</Seq-annot>
</annot>
</seq>
</Seq-entry>
<Seq-entry>
<seq>
<id>
<Seq-id>
<genbank>
<accession>ACH57477</accession>
<version>1</version>
</genbank>
</Seq-id>
<Seq-id>
<gi>197292135</gi>
</Seq-id>
</id>
<descr>
<Seqdesc>
<molinfo>
<biomol>
<peptide/>
</biomol>
<tech>
<concept-trans/>
</tech>
<completeness>
<no-ends/>
</completeness>
</molinfo>
</Seqdesc>
<Seqdesc>
<genbank>
<keywords>
<VisibleString>GDS</VisibleString>
</keywords>
</genbank>
</Seqdesc>
<Seqdesc>
<title>tyrosine aminotransferase [Gulo gulo]</title>
</Seqdesc>
<Seqdesc>
<create-date>
<std>
<year>2008</year>
<month>8</month>
<day>26</day>
</std>
</create-date>
</Seqdesc>
</descr>
<inst>
<repr>
<raw/>
</repr>
<mol>
<aa/>
</mol>
<length>2</length>
<topology>
<linear/>
</topology>
<seq-data>
<ncbieaa>DE</ncbieaa>
</seq-data>
</inst>
<annot>
<Seq-annot>
<data>
<ftable>
<Seq-feat>
<data>
<prot>
<name>
<VisibleString>tyrosine aminotransferase</VisibleString>
</name>
<processed>
<not-set/>
</processed>
</prot>
</data>
<partial>true</partial>
<location>
<int>
<from>0</from>
<to>1</to>
<id>
<gi>197292135</gi>
</id>
<fuzz-from>
<lim>
<lt/>
</lim>
</fuzz-from>
<fuzz-to>
<lim>
<gt/>
</lim>
</fuzz-to>
</int>
</location>
</Seq-feat>
</ftable>
</data>
</Seq-annot>
</annot>
</seq>
</Seq-entry>
</seq-set>
<annot>
<Seq-annot>
<data>
<ftable>
<Seq-feat>
<data>
<cdregion>
<frame>
<three/>
</frame>
<code>
<CHOICE>
<id>1</id>
</CHOICE>
</code>
</cdregion>
</data>
<partial>true</partial>
<comment>encoded by putative exon 8</comment>
<product>
<whole>
<gi>197292135</gi>
</whole>
</product>
<location>
<int>
<from>0</from>
<to>7</to>
<strand>
<plus/>
</strand>
<id>
<gi>197292134</gi>
</id>
<fuzz-from>
<lim>
<lt/>
</lim>
</fuzz-from>
<fuzz-to>
<lim>
<gt/>
</lim>
</fuzz-to>
</int>
</location>
</Seq-feat>
</ftable>
</data>
</Seq-annot>
</annot>
</set>
</Seq-entry>
</seq-set>
</Bioseq-set>
 
 
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