LARTS Online GenBank example for aconitase
LOCUS BC120006 3515 bp mRNA linear MAM 9-JUN-2008
DEFINITION Bos taurus aconitase 1, soluble, mRNA (cDNA clone MGC:140553 IMAGE:8271825), complete cds
ACCESSION BC120006
VERSION BC120006.1 GI:111304915
KEYWORDS MGC.
SOURCE Bos taurus (cattle)
ORGANISM Bos taurus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
REFERENCE 1 (bases 1 to 3515)
AUTHORS Moore, S., Alexander, L., Brownstein, M., Guan, L., Lobo, S., Meng, Y., Tanaguchi, M., Wang, Z., Yu, J., Prange, C., Schreiber, K., Shenmen, C., Wagner, L., Bala, M., Barbazuk, S., Barber, S., Babakaiff, R., Beland, J., Chun, E., Del Rio, L., Gibson, S., Hanson, R., Kirkpatrick, R., Liu, J., Matsuo, C., Mayo, M., Santos, R.R., Stott, J., Tsai, M., Wong, D., Siddiqui, A., Holt, R., Jones, S.J., Marra, M.A.
TITLE Direct Submission.
JOURNAL Submitted (1-AUG-2006) Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, British Columbia, Canada, Suite 100, 570 West 7th Avenue, V5Z 4S6
COMMENT Contact: Robert Kirkpatrick
Canada's Michael Smith Genome Sciences Centre
BC Cancer Agency
Suite 100, 570 West 7th Avenue, Vancouver, British Columbia, Canada, V5Z 4S6
Tel: 1 604 707 5900 x5406
Fax: 1 604 876 3561
Email: robertk@bcgsc.ca
Tissue Procurement: Y. Meng, M. Taniguchi, L. Guan and S. Moore
cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo, L. Guan and Dr. S. Moore
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Bovine Genome Sequencing Program, Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y, Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L, Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H, Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W, Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R, Jones S, Marra M
Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 266 Row: e Column: 17
ORIGIN 3515 bp linear
>gi|111304915|gb|BC120006.1| Bos taurus aconitase 1, soluble, mRNA (cDNA clone MGC:140553 IMAGE:8271825), complete cds
GACTCAGCCGCAGAGAGCGCCCCCAGCCTGGTTCCCCGCGCCAGTCGGAGTCCTCCGTGC
ACTCCGCGGGACACCTGGTCATCAGGAATCATGAGCAACCCATTTGCACACCTTGTTGAG
CCTTTGGATCCTGCACAACCAGGAAAGAAGTTCTTCAATTTGAATAAATTGGAGGATTCC
AGATATGGATCCTTACCATTTTCTATCAGAGTTCTCCTGGAGGCAGCCATTCGGAACTGT
GATCAATTTTTGGTGAAGAAAAATGATGTTGAAAATATCCTGAATTGGAAGGTCATGCAG
CATAAGAACATAGAAGTGCCCTTTAAGCCTGCCCGAGTCATCCTGCAGGACTTTACGGGT
GTGCCAGCTGTGGTTGACTTTGCTGCCATGCGTGATGCTGTGAAAAAGTTAGGAGGCAAT
CCAGAGAAAATAAACCCCATCTGTCCTGCTGATCTTGTCATTGATCATTCCATCCAGGTT
GATTTCAACAGAAGGGCAGACAGTTTAAAGAAGAATCAAGACTTGGAATTTGAAAGAAAT
AAAGAACGATTTGAATTTTTAAAGTGGGGCTCTCAGGCCTTTCACAACATGAGGATTATT
CCACCGGGCTCAGGAATCATCCACCAGGTGAATCTGGAGTATTTGGCAAGAGTGGTCTTT
GATCAGGATGGATATTACTACCCAGACAGCCTTGTGGGCACAGATTCGCACACCACCATG
ATTGATGGTTTGGGTGTCCTTGGTTGGGGTGTGGGTGGTATCGAAGCAGAAGCTGTGATG
CTGGGCCAGCCAATCAGCATGGTGCTTCCCCAGGTGATCGGCTACAGGCTGGTGGGAAAT
CCCCACCCCCTGGTCACATCCACTGACATCGTGCTCACCATCACCAAGCACCTCCGCCAG
GTTGGGGTAGTAGGCAAGTTTGTCGAGTTCTTTGGGCCAGGAGTAGCCCAACTGTCCATT
GCCGACCGAGCTACAATTGCCAACATGTGTCCAGAGTATGGGGCCACTGCCGCCTTTTTC
CCAGTTGATGAAGTTAGTATCAAGTACCTGGTGCAGACAGGTCGTGACAAAGAAAAAGTA
AAGCATATTAAACAGTATCTTCAGGCTGTAGGAATGTTTCGGGACTTCAGTGACTCCTCT
CAAGACCCAGACTTTGCCCAGGTTGTGGAATTAGACTTGAAAACAGTAGTGCCTTGCTGC
AGCGGACCCAAAAGGCCTCAGGACAAAGTTGCCGTGTCTGATATGAAAAAGGACTTTGAG
AGCTGCCTGGGGGCCAAGCAAGGATTTAAAGGATTCCAGGTTGCTCCAGACCATCATAAT
GACCATAAGACATTTATCTATAATAACAGCAAGTTCACCCTTGCTCATGGTTCTGTGGTA
ATCGCTGCCATTACTAGCTGCACAAACACCAGTAATCCATCTGTGATGTTAGGGGCAGGC
TTGTTAGCGAAGAAGGCTGTGGATGCAGGCCTGAGCGTGAAGCCTTACATCAAAACTAGC
CTGTCTCCTGGCAGTGGTGTGGTCACCTACTACCTGCGGGAAAGCGGAGTCATGCCTTAC
CTGTCTCAGCTTGGGTTTGACGTGGTGGGCTATGGCTGCATGACCTGCATCGGCAACAGC
GGGCCCTTACCGGAAGCTGTGGTAGAAGCCATCGTACAGGGGGACCTCGTAGCTGTTGGA
GTACTGTCTGGGAACAGGAACTTTGAAGGGCGAGTCCACCCCAATACCCGGGCCAACTAT
TTAGCCTCTCCGCCCTTAGTAATAGCCTATGCGATTGCTGGGACCATCAGGATCGACTTT
GAGAAAGAGCCACTAGGTGTCAATGCCAAGGGACAGCAAGTATTTCTGAAAGATATCTGG
CCGACCAGAGATGAGATCCAGGCAGTGGAACGTCAGTACGTGATCCCTGGGATGTTTAAG
GAGGTCTACCAGAAAATAGAGACTGTGAATGAGAGCTGGAATGCCTTAGCAGCCCCGTCA
GATAAGCTATATTGCTGGAATCCCAAATCTACATACATTAAATCACCACCATTCTTTGAA
GACCTGACTTTGGATCTTCAGCCCCCTAAGTCTATTGTGGATGCCTATGTGCTATTAAAC
TTGGGAGATTCAGTAACAACAGACCACATCTCTCCAGCTGGAAACATCGCAAGAAACAGC
CCTGCTGCTCGCTACTTAACTAACAGAGGCCTGACTCCTCGAGAATTCAACTCCTACGGC
TCCCGCCGAGGGAATGATGCCATCATGGCACGGGGGACATTTGCCAACATCCGCTTATTA
AACAAATTCTTGAACAAGCAGGCACCGCAGACTATCCACCTGCCTTCTGGTGAAATTCTT
GACGTGTTCGACGCCGCTGAGCGGTACCAGCAGGCGGGCCTCCCCCTCATCGTCCTGGCG
GGCAAAGAGTACGGCTCGGGCAGCTCCCGAGACTGGGCCGCCAAGGGCCCTTTCCTCCTG
GGAATCAGAGCTGTCCTAGCAGAGAGTTACGAGCGCATTCACCGAAGTAACTTGGTCGGG
ATGGGGGTGATCCCTCTCGAGTACCTCCCTGGGGAGAATGCAGACACCCTGGGACTCACT
GGGCGTGAACGATACACTATTAGCATTCCAGAAACCCTGAAACCACGAATGAAAGTCCAG
ATCAAGCTGGATACCGGGAAGACCTTCCAGGCTGTCATGAGGTTTGACACCGACGTGGAG
CTCACTTATTTCCATAACGGGGGCATCCTCAACTACATGATCCGCAAGATGACCAAGTAG
GCCCTGGTGTCCCAGCTGCCCGGTGGCAGGAGGAAGCACAGCGTCCGCAGCCCGCAGGCC
CTGGGTTGGCAGCGTCCCCGCCCCAGCCTCCTCCCCCGACCCTCCCCTCCATGCAGGGGT
GCTGCCTGCCCAGGGCACCCTGAGGTTCCAGTGTGGATCCTGTGCACACAGAATCAGCAG
TTTCTACATGCTCTATTTTTGTTAATCTTTTTATCTTGTTGTAGAATTTGGGAGCTTAGA
ATGGTGGGACTGTCACTTGTGCCAAGAAGGGAGAGTTGAGCCCTTTAAGGTCACTGATCA
CTGAATGTTGATTTTTCACTCTTAGCCTCTAATGTTCAGGTGAACACACGTCCGTCTCTT
GCCCAGTTTCTGGCTCCTCTCTGTTACCCTCTGCTCAGTGAAACCTTCCCCTTGAGAGTG
CTTCGCCTCTGTGTGCGCCACCAGTGTTAGCTGACAAGGCAGAGGGGAACGTGTTCGAAC
GTGGTGACTAGTCCCTGCACCCCGCCCTTTCCTCCAGTGAGTGACCCAGGCACCTCATGA
ACAGCTCAGACACTGAAGTTTTTGCTTGTGTACCTTTTGACAGATCCACACTGAAGAAAT
ACGGAGATTTCTTTCAGTAGTTTCATAAAGTTTCCCTAGAAAACTTTTCATATATCAGGA
GGAGAACTTTGGAGGTGGTTTTGGTGGAGAGAGATGCAGAACATTTCTAATTTGAATAAG
ATTAAATCTATTTTCAAGGAAAAAAAAAAAAAAAA
FEATURES Location/Qualifiers
source 1..3515
/organism="Bos taurus"
/genus="Bos"
/species="taurus"
/mol_type="mRNA"
/dbxref="taxon:9913"
/clone="MGC:140553 IMAGE:8271825"
/tissue-type="Fetal pons, Hereford, 6 month male fetus"
/clone-lib="GC_BGC-19"
/lab-host="ElectroMAX DH10B T1 Phage Resistent cells"
/strain="Hereford"
/other="Vector: pCMV-SPORT6.0"
gene 1..3515
/gene="ACO1"
/db_xref="GeneID:512995"
CDS 91..2760
/gene="ACO1"
/codon_start="1"
/db_xref="GeneID:512995"
/product="aconitase 1, soluble"
/protein_id="AAI20007.1"
/db_xref="GI:111304916"
/translation="MSNPFAHLVEPLDPAQPGKKFFNLNKLEDSRYGSLPFSIRVLLEAAIRNCDQFLVKKNDVENILNWKVMQHKNIEVPFKPARVILQDFTGVPAVVDFAAMRDAVKKLGGNPEKINPICPADLVIDHSIQVDFNRRADSLKKNQDLEFERNKERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPQVIGYRLVGNPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSIKYLVQTGRDKEKVKHIKQYLQAVGMFRDFSDSSQDPDFAQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPDHHNDHKTFIYNNSKFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLSVKPYIKTSLSPGSGVVTYYLRESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEAVVEAIVQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALAAPSDKLYCWNPKSTYIKSPPFFEDLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAIMARGTFANIRLLNKFLNKQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGSGSSRDWAAKGPFLLGIRAVLAESYERIHRSNLVGMGVIPLEYLPGENADTLGLTGRERYTISIPETLKPRMKVQIKLDTGKTFQAVMRFDTDVELTYFHNGGILNYMIRKMTK"
graph 1..3515
/graph_title="Phrap Quality"
/graph_numvals="3515"
/gene="ACO1"
//