LARTS Online GenBank example for actinin
LOCUS BC122618 2982 bp mRNA linear MAM 9-JUN-2008
DEFINITION Bos taurus actinin, alpha 3, mRNA (cDNA clone MGC:140041 IMAGE:8286739), complete cds
ACCESSION BC122618
VERSION BC122618.1 GI:113911877
KEYWORDS MGC.
SOURCE Bos taurus (cattle)
ORGANISM Bos taurus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
REFERENCE 1 (bases 1 to 2982)
AUTHORS Moore, S., Alexander, L., Brownstein, M., Guan, L., Lobo, S., Meng, Y., Tanaguchi, M., Wang, Z., Yu, J., Prange, C., Schreiber, K., Shenmen, C., Wagner, L., Bala, M., Barbazuk, S., Barber, S., Babakaiff, R., Beland, J., Chun, E., Del Rio, L., Gibson, S., Hanson, R., Kirkpatrick, R., Liu, J., Matsuo, C., Mayo, M., Santos, R.R., Stott, J., Tsai, M., Wong, D., Siddiqui, A., Holt, R., Jones, S.J., Marra, M.A.
TITLE Direct Submission.
JOURNAL Submitted (31-AUG-2006) Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, British Columbia, Canada, Suite 100, 570 West 7th Avenue, V5Z 4S6
COMMENT Contact: Robert Kirkpatrick
Canada's Michael Smith Genome Sciences Centre
BC Cancer Agency
Suite 100, 570 West 7th Avenue, Vancouver, British Columbia, Canada, V5Z 4S6
Tel: 1 604 707 5900 x5406
Fax: 1 604 876 3561
Email: robertk@bcgsc.ca
Tissue Procurement: Lee Alexander, USDA, ARS, NPA
cDNA Library Preparation: Express Genomics
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Bovine Genome Sequencing Program, Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y, Tanaguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L, Ali J, Chun E, Liao N, Beland J, Cruz K, Featherstone R, Kirk H, Matsuo C, Mayo M, Moore R, Munro S, Roger J, Tam B, Trinh E, Sze W, Wilton J, Wanger S, Huang P, Chu B, Imanian B, Roscoe R, Holt R, Jones S, Marra M
Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 269 Row: o Column: 19
ORIGIN 2982 bp linear
>gi|113911877|gb|BC122618.1| Bos taurus actinin, alpha 3, mRNA (cDNA clone MGC:140041 IMAGE:8286739), complete cds
CTTAACGCGGCCCCCGTGTTCTGGAGCGCGCCGAGCAGAGCGGAGCCAGGAGCCCGAACA
AGATGATGATGGTTCTGCAGCCCGAGGGTCTGGGGACCGGGGAGGGGCCCTTCGCGGGCG
GCCGTGGGGGCGGCGAATACATGGAACAGGAGGAGGACTGGGACCGCGACCTGCTGTTGG
ACCCGGCCTGGGAGAAGCAGCAGCGGAAAACCTTCACTGCCTGGTGCAACTCACACCTGC
GCAAGGCTGGCACCCAGATCGAGAACATCGAGGAGGATTTCCGCAATGGCCTCAAACTCA
TGTTGCTCCTGGAGGTTATTTCAGGAGAGAGGCTGCCCAGACCAGACAAAGGCAAGATGC
GCTTCCACAAGATTGCCAATGTCAACAAGGCCCTGGATTTCATTGCCAGCAAGGGGGTGA
AGCTGGTGTCCATCGGTGCTGAAGAGATTGTTGACGGGAACCTGAAGATGACCCTGGGCA
TGATCTGGACCATCATCCTTCGCTTTGCCATCCAGGACATCTCCGTGGAAGAAACCTCGG
CCAAGGAAGGCTTGCTCCTGTGGTGTCAGCGGAAGACGGCGCCGTACCGCAACGTCAACG
TGCAGAACTTCCACACCAGCTGGAAGGATGGGCTGGCCCTCTGTGCTCTCATCCACCGAC
ACCGCCCCGACCTCATTGACTATGCCAAACTGCGCAAGGACGACCCCATCGGCAACTTGA
ACACCGCCTTTGAGGTGGCCGAGAAGTACCTGGACATCCCTAAGATGCTGGATGCAGAAG
ACATTGTGAACACCCCAAAGCCTGATGAGAAGGCCATCATGACCTATGTCTCCTGCTTCT
ACCACGCCTTTGCCGGGGCGGAGCAGGCAGAGACAGCTGCCAACAGGATCTGCAAAGTGC
TGGCCGTGAACCAGGAGAACGAGAAGCTGATGGAGGAATATGAAAAGCTGGCCAGTGAGC
TACTGGAATGGATCCGCCGGACCGTGCCGTGGCTGGAGAACCGCGTGGGCGAGCCCAGCA
TGAGCGCCATGCAACGCAAGCTGGAAGACTTCCGGGACTACCGGCGCCTGCACAAGCCGC
CCCGCGTGCAGGAGAAGTGCCAGCTGGAGATTAACTTCAACACACTGCAGACCAAGCTGC
GGCTGAGCCACCGGCCGGCCTTCATGCCATCTGAGGGCAAGCTGGTCTCGGACATCGCCA
ACGCATGGCGGGGCCTGGAGCAGGCAGAGAAGGGCTATGAGGATTGGCTGCTCTCCGAGA
TCCGGCGCCTACAGCGGCTGCAGCACCTGGCGGAGAAGTTCCAGCAGAAGGCCTCCCTGC
ATGAAGCCTGGACCCGGGGAAAGGAGGACATGCTGAGCCAGAGGGACTACGAGACGGCTT
CGCTGCAGGAGGTGCGGGCCTTGCTGCGGCGCCACGAGGCCTTCGAGAGCGACCTGGCGG
CGCACCAGGACCGCGTGGAGCACATCGCTGCGCTGGCCCAGGAGCTCAATGAGCTGGACT
ACCACGAGGCAGCCTCGGTGAACAGCCGCTGCCAGGCCATCTGTGACCAGTGGGACAACC
TGGGCACGCTGACCCAGAAGAGGCGGGATGCACTGGAGCGGATGGAGAAGCTCCTAGAGA
CCATCGATCAGCTACAGCTGGAGTTTGCCCGGCGGGCAGCGCCCTTCAACAACTGGCTGG
ACGGCGCCGTGGAGGACCTGCAGGACGTGTGGCTGGTGCACTCGGTGGAGGAGACCCAGA
GCTTGGTGACAGCACACGACCAGTTCAAGGCAACACTGCCCGAGGCCGACCGAGAGAGGG
GTGCCATCCTGGGCATCCAGGGTGAGATCCAGAAGATCTGCCAAACGTACGGACTGCGGC
CCAGCTCCACCAACCCCTACATCACCCTCACCCCGCAGGACATCAACACCAAGTGGGACA
CGGTCCGAAAGCTGGTACCCAGCCGTGACCAGATGCTGCAGGAGGAGCTGACGCGGCAGC
AGGTGAACGAGAGGCTCCGGCGGCAGTTTGCAGCCCAGGCCAACGCCATCGGGCCCTGGA
TCCAGGGGAAGGTGGAGGAAGTGGGGCGCCTAGCCGCGGGGATGGCCGGCTCTCTGGAGG
AGCAGATGGCGGGCCTGCGGCAGCAGGAGCAGAATATCATCAACTACAAGAGCAACATCG
ACCGGCTGGAGGGAGACCACCAGCTGCTGCAGGAGAGTCTGGTGTTTGACAACAAGCACA
CGGTCTACAGCATGGAGCACATCCGCGTGGGCTGGGAGCAGCTGCTCACCTCCATCGCAC
GCACCATCAACGAGGTGGAGAACCAGGTACTGACCCGAGACGCCAAGGGCCTGAGTCAGG
AGCAGCTCAACGAGTTCCGGGCATCTTTCAACCACTTTGACCGGAAGCGGAATGGCATGA
TGGAGCCTGATGACTTCCGGGCCTGCCTCATCTCCATGGGCTATGACCTGGGGGAGGTGG
AGTTCGCTCGCATCATGACCATGGTGGACCCCAACGCAGCTGGGGTTGTGACCTTCCAAG
CCTTCATCGACTTTATGACCCGAGAGACAGCCGAGACAGACACGGCTGAGCAGGTTGTGG
CCTCGTTCAAGATCCTGGCGGGAGACAAGAACTACATCACCGCCGAGGAGCTGCGGCGGG
AACTCCCGGCGGAGCAGGCCGAGTACTGCATCCGCCGCATGGCGCCCTACAAGGGGGCTG
GGGCTCCAGCTGGAGCCCTGGACTACGTGGCCTTCTCCAGTGCCCTCTACGGGGAGAGTG
ACCTCTGACGTTGACCCCAGAGCTTCCCTACTCAAGTCCGGAGAGAGGGTGCTCCCTCTG
GCTGATCCCACCCATCCCTTGGAGCCATGGCCACAGAGCCGAGTGTTTCTCAATAAAGAT
CCATCGTGGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
FEATURES Location/Qualifiers
source 1..2982
/organism="Bos taurus"
/genus="Bos"
/species="taurus"
/mol_type="mRNA"
/dbxref="taxon:9913"
/clone="MGC:140041 IMAGE:8286739"
/tissue-type="Fetal muscle , female fetus 6 months, L1 Hereford"
/clone-lib="GC_BGC-30"
/lab-host="DH10B"
/strain="L1 Hereford"
/other="Vector: pExpress1"
gene 1..2982
/gene="ACTN3"
/db_xref="GeneID:539375"
CDS 63..2768
/gene="ACTN3"
/codon_start="1"
/db_xref="GeneID:539375"
/product="actinin, alpha 3"
/protein_id="AAI22619.1"
/db_xref="GI:113911878"
/translation="MMMVLQPEGLGTGEGPFAGGRGGGEYMEQEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAGAEQAETAANRICKVLAVNQENEKLMEEYEKLASELLEWIRRTVPWLENRVGEPSMSAMQRKLEDFRDYRRLHKPPRVQEKCQLEINFNTLQTKLRLSHRPAFMPSEGKLVSDIANAWRGLEQAEKGYEDWLLSEIRRLQRLQHLAEKFQQKASLHEAWTRGKEDMLSQRDYETASLQEVRALLRRHEAFESDLAAHQDRVEHIAALAQELNELDYHEAASVNSRCQAICDQWDNLGTLTQKRRDALERMEKLLETIDQLQLEFARRAAPFNNWLDGAVEDLQDVWLVHSVEETQSLVTAHDQFKATLPEADRERGAILGIQGEIQKICQTYGLRPSSTNPYITLTPQDINTKWDTVRKLVPSRDQMLQEELTRQQVNERLRRQFAAQANAIGPWIQGKVEEVGRLAAGMAGSLEEQMAGLRQQEQNIINYKSNIDRLEGDHQLLQESLVFDNKHTVYSMEHIRVGWEQLLTSIARTINEVENQVLTRDAKGLSQEQLNEFRASFNHFDRKRNGMMEPDDFRACLISMGYDLGEVEFARIMTMVDPNAAGVVTFQAFIDFMTRETAETDTAEQVVASFKILAGDKNYITAEELRRELPAEQAEYCIRRMAPYKGAGAPAGALDYVAFSSALYGESDL"
graph 1..2982
/graph_title="Phrap Quality"
/graph_numvals="2982"
/gene="ACTN3"
//