SEQUENCE | { |
name | VisibleString |
value | VisibleString |
} |
SEQUENCE | { |
number | INTEGER |
charge | SEQUENCE OF INTEGER |
precursormz | INTEGER |
mz | SEQUENCE OF INTEGER |
abundance | SEQUENCE OF INTEGER |
iscale | REAL |
ids | SEQUENCE OF VisibleString OPTIONAL |
namevalue | SEQUENCE OF NameValue OPTIONAL |
} |
INTEGER | { |
trypsin | 0 |
argc | 1 |
cnbr | 2 |
chymotrypsin | 3 |
formicacid | 4 |
lysc | 5 |
lysc-p | 6 |
pepsin-a | 7 |
tryp-cnbr | 8 |
tryp-chymo | 9 |
trypsin-p | 10 |
whole-protein | 11 |
aspn | 12 |
gluc | 13 |
aspngluc | 14 |
top-down | 15 |
semi-tryptic | 16 |
no-enzyme | 17 |
chymotrypsin-p | 18 |
aspn-de | 19 |
gluc-de | 20 |
lysn | 21 |
thermolysin-p | 22 |
semi-chymotrypsin | 23 |
semi-gluc | 24 |
max | 25 |
none | 255 |
} |
INTEGER | { |
methylk | 0 |
oxym | 1 |
carboxymethylc | 2 |
carbamidomethylc | 3 |
deamidationkq | 4 |
propionamidec | 5 |
phosphorylations | 6 |
phosphorylationt | 7 |
phosphorylationy | 8 |
ntermmcleave | 9 |
ntermacetyl | 10 |
ntermmethyl | 11 |
ntermtrimethyl | 12 |
methythiold | 13 |
methylq | 14 |
trimethylk | 15 |
methyld | 16 |
methyle | 17 |
ctermpepmethyl | 18 |
trideuteromethyld | 19 |
trideuteromethyle | 20 |
ctermpeptrideuteromethyl | 21 |
nformylmet | 22 |
twoamino3oxobutanoicacid | 23 |
acetylk | 24 |
ctermamide | 25 |
bmethylthiold | 26 |
carbamidomethylk | 27 |
carbamidometylh | 28 |
carbamidomethyld | 29 |
carbamidomethyle | 30 |
carbamylk | 31 |
ntermcarbamyl | 32 |
citrullinationr | 33 |
cysteicacidc | 34 |
diiodinationy | 35 |
dimethylk | 36 |
dimethylr | 37 |
ntermpepdimethyl | 38 |
dihydroxyf | 39 |
thioacetylk | 40 |
ntermpeptioacetyl | 41 |
farnesylationc | 42 |
formylk | 43 |
ntermpepformyl | 44 |
formylkynureninw | 45 |
phef | 46 |
gammacarboxyld | 47 |
gammacarboxyle | 48 |
geranylgeranylc | 49 |
ntermpepglucuronylg | 50 |
glutathionec | 51 |
glyglyk | 52 |
guanidinationk | 53 |
his2asnh | 54 |
his2asph | 55 |
ctermpephsem | 56 |
ctermpephselactm | 57 |
hydroxykynureninw | 58 |
hydroxylationd | 59 |
hydroxylationk | 60 |
hydroxylationn | 61 |
hydroxylationp | 62 |
hydroxylationf | 63 |
hydroxylationy | 64 |
iodinationy | 65 |
kynureninw | 66 |
lipoylk | 67 |
ctermpepmeester | 68 |
meesterd | 69 |
meestere | 70 |
meesters | 71 |
meestery | 72 |
methylc | 73 |
methylh | 74 |
methyln | 75 |
ntermpepmethyl | 76 |
methylr | 77 |
ntermpepmyristoyeylationg | 78 |
ntermpepmyristoyl4hg | 79 |
ntermpepmyristoylationg | 80 |
myristoylationk | 81 |
ntermformyl | 82 |
nemc | 83 |
nipcam | 84 |
nitrow | 85 |
nitroy | 86 |
ctermpepo18 | 87 |
ctermpepdio18 | 88 |
oxyh | 89 |
oxyw | 90 |
ppantetheines | 91 |
palmitoylationc | 92 |
palmitoylationk | 93 |
palmitoylations | 94 |
palmitoylationt | 95 |
phospholosss | 96 |
phospholosst | 97 |
phospholossy | 98 |
phosphoneutrallossc | 99 |
phosphoneutrallossd | 100 |
phosphoneutrallossh | 101 |
propionylk | 102 |
ntermpeppropionyl | 103 |
propionylheavyk | 104 |
ntermpeppropionylheavy | 105 |
pyridylk | 106 |
ntermpeppyridyl | 107 |
ntermpeppyrocmc | 108 |
ntermpeppyroe | 109 |
ntermpeppyroq | 110 |
pyroglutamicp | 111 |
spyridylethylc | 112 |
semetm | 113 |
sulfationy | 114 |
suphonem | 115 |
triiodinationy | 116 |
trimethylationr | 117 |
ntermpeptripalmitatec | 118 |
usermod1 | 119 |
usermod2 | 120 |
usermod3 | 121 |
usermod4 | 122 |
usermod5 | 123 |
usermod6 | 124 |
usermod7 | 125 |
usermod8 | 126 |
usermod9 | 127 |
usermod10 | 128 |
icatlight | 129 |
icatheavy | 130 |
camthiopropanoylk | 131 |
phosphoneutrallosss | 132 |
phosphoneutrallosst | 133 |
phosphoetdlosss | 134 |
phosphoetdlosst | 135 |
arg-13c6 | 136 |
arg-13c6-15n4 | 137 |
lys-13c6 | 138 |
oxy18 | 139 |
beta-elim-s | 140 |
beta-elim-t | 141 |
usermod11 | 142 |
usermod12 | 143 |
usermod13 | 144 |
usermod14 | 145 |
usermod15 | 146 |
usermod16 | 147 |
usermod17 | 148 |
usermod18 | 149 |
usermod19 | 150 |
usermod20 | 151 |
usermod21 | 152 |
usermod22 | 153 |
usermod23 | 154 |
usermod24 | 155 |
usermod25 | 156 |
usermod26 | 157 |
usermod27 | 158 |
usermod28 | 159 |
usermod29 | 160 |
usermod30 | 161 |
sulfinicacid | 162 |
arg2orn | 163 |
dehydro | 164 |
carboxykynurenin | 165 |
sumoylation | 166 |
iTRAQ114nterm | 167 |
iTRAQ114K | 168 |
iTRAQ114Y | 169 |
iTRAQ115nterm | 170 |
iTRAQ115K | 171 |
iTRAQ115Y | 172 |
iTRAQ116nterm | 173 |
iTRAQ116K | 174 |
iTRAQ116Y | 175 |
iTRAQ117nterm | 176 |
iTRAQ117K | 177 |
iTRAQ117Y | 178 |
mmts | 179 |
lys-2H4 | 180 |
lys-13C615N2 | 181 |
hexNAcN | 182 |
dHexHexNAcN | 183 |
hexNAcS | 184 |
hexNAcT | 185 |
mod186 | 186 |
mod187 | 187 |
mod188 | 188 |
mod189 | 189 |
mod190 | 190 |
mod191 | 191 |
mod192 | 192 |
mod193 | 193 |
mod194 | 194 |
mod195 | 195 |
mod196 | 196 |
mod197 | 197 |
mod198 | 198 |
mod199 | 199 |
mod200 | 200 |
mod201 | 201 |
mod202 | 202 |
mod203 | 203 |
mod204 | 204 |
mod205 | 205 |
mod206 | 206 |
mod207 | 207 |
mod208 | 208 |
mod209 | 209 |
mod210 | 210 |
mod211 | 211 |
mod212 | 212 |
mod213 | 213 |
mod214 | 214 |
mod215 | 215 |
mod216 | 216 |
mod217 | 217 |
mod218 | 218 |
mod219 | 219 |
mod220 | 220 |
mod221 | 221 |
mod222 | 222 |
mod223 | 223 |
mod224 | 224 |
mod225 | 225 |
mod226 | 226 |
mod227 | 227 |
mod228 | 228 |
mod229 | 229 |
mod230 | 230 |
max | 231 |
unknown | 9999 |
none | 10000 |
} |
INTEGER | { |
modaa | 0 |
modn | 1 |
modnaa | 2 |
modc | 3 |
modcaa | 4 |
modnp | 5 |
modnpaa | 6 |
modcp | 7 |
modcpaa | 8 |
modmax | 9 |
} |
SEQUENCE | { |
monomass | REAL |
averagemass | REAL |
n15mass | REAL |
} |
SEQUENCE | { |
mod | MSMod |
type | MSModType |
name | VisibleString |
monomass | REAL |
averagemass | REAL |
n15mass | REAL |
residues | SEQUENCE OF VisibleString OPTIONAL |
neutralloss | MSMassSet OPTIONAL |
unimod | INTEGER OPTIONAL |
psi-ms | VisibleString OPTIONAL |
} |
INTEGER | { |
dontcalc | 0 |
calc | 1 |
} |
INTEGER | { |
calculate | 0 |
usefile | 1 |
userange | 2 |
} |
SEQUENCE | { |
calcplusone | MSCalcPlusOne DEFAULT calc |
calccharge | MSCalcCharge DEFAULT userange |
mincharge | INTEGER DEFAULT 2 |
maxcharge | INTEGER DEFAULT 3 |
considermult | INTEGER DEFAULT 3 |
plusone | REAL |
maxproductcharge | INTEGER OPTIONAL |
prodlesspre | BOOLEAN OPTIONAL |
negative | INTEGER DEFAULT 1 |
} |
INTEGER | { |
monoisotopic | 0 |
average | 1 |
monon15 | 2 |
exact | 3 |
multiisotope | 4 |
max | 5 |
} |
INTEGER | { |
independent | 0 |
linearwithz | 1 |
max | 2 |
} |
SEQUENCE | { |
researchthresh | REAL |
subsetthresh | REAL |
replacethresh | REAL |
} |
SEQUENCE | { |
libnames | SEQUENCE OF VisibleString |
presearch | BOOLEAN |
useomssascore | BOOLEAN |
usereplicatescore | BOOLEAN |
qtofscore | BOOLEAN |
} |
SEQUENCE | { |
precursorsearchtype | MSSearchType |
productsearchtype | MSSearchType |
ionstosearch | SEQUENCE OF MSIonType |
peptol | REAL |
msmstol | REAL |
zdep | MSZdependence |
cutoff | REAL |
cutlo | REAL |
cuthi | REAL |
cutinc | REAL |
singlewin | INTEGER |
doublewin | INTEGER |
singlenum | INTEGER |
doublenum | INTEGER |
fixed | SEQUENCE OF MSMod |
variable | SEQUENCE OF MSMod |
enzyme | MSEnzymes |
missedcleave | INTEGER |
hitlistlen | INTEGER DEFAULT 25 |
db | VisibleString |
tophitnum | INTEGER |
minhit | INTEGER DEFAULT 2 |
minspectra | INTEGER DEFAULT 4 |
scale | INTEGER DEFAULT 100 |
maxmods | INTEGER DEFAULT 64 |
taxids | SEQUENCE OF INTEGER OPTIONAL |
chargehandling | MSChargeHandle OPTIONAL |
usermods | MSModSpecSet OPTIONAL |
pseudocount | INTEGER DEFAULT 1 |
searchb1 | INTEGER DEFAULT 0 |
searchctermproduct | INTEGER DEFAULT 0 |
maxproductions | INTEGER DEFAULT 0 |
minnoenzyme | INTEGER DEFAULT 4 |
maxnoenzyme | INTEGER DEFAULT 0 |
exactmass | REAL OPTIONAL |
settingid | INTEGER OPTIONAL |
iterativesettings | MSIterativeSettings OPTIONAL |
precursorcull | INTEGER OPTIONAL |
infiles | SEQUENCE OF MSInFile OPTIONAL |
outfiles | SEQUENCE OF MSOutFile OPTIONAL |
nocorrelationscore | INTEGER OPTIONAL |
probfollowingion | REAL OPTIONAL |
nmethionine | BOOLEAN OPTIONAL |
automassadjust | REAL OPTIONAL |
lomasscutoff | REAL OPTIONAL |
libsearchsettings | MSLibrarySettings OPTIONAL |
noprolineions | SEQUENCE OF MSIonType OPTIONAL |
reversesearch | BOOLEAN OPTIONAL |
othersettings | SEQUENCE OF NameValue OPTIONAL |
numisotopes | INTEGER OPTIONAL |
pepppm | BOOLEAN OPTIONAL |
msmsppm | BOOLEAN OPTIONAL |
reportedhitcount | INTEGER OPTIONAL |
} |
INTEGER | { |
none | 0 |
asntext | 1 |
asnbinary | 2 |
xml | 3 |
csv | 4 |
pepxml | 5 |
xmlbz2 | 6 |
} |
SEQUENCE | { |
outfile | VisibleString |
outfiletype | MSSerialDataFormat |
includerequest | BOOLEAN |
} |
INTEGER | { |
dta | 0 |
dtablank | 1 |
dtaxml | 2 |
asc | 3 |
pkl | 4 |
pks | 5 |
sciex | 6 |
mgf | 7 |
unknown | 8 |
oms | 9 |
omx | 10 |
xml | 11 |
omxbz2 | 12 |
} |
SEQUENCE | { |
infile | VisibleString |
infiletype | MSSpectrumFileType |
} |
SEQUENCE | { |
spectra | MSSpectrumset |
settings | MSSearchSettings |
rid | VisibleString OPTIONAL |
moresettings | MSSearchSettingsSet OPTIONAL |
modset | MSModSpecSet OPTIONAL |
} |
INTEGER | { |
a | 0 |
b | 1 |
c | 2 |
x | 3 |
y | 4 |
z | 5 |
parent | 6 |
internal | 7 |
immonium | 8 |
unknown | 9 |
adot | 10 |
x-CO2 | 11 |
adot-CO2 | 12 |
max | 13 |
} |
INTEGER | { |
water | 0 |
ammonia | 1 |
} |
INTEGER | { |
monoisotopic | 0 |
c13 | 1 |
c13two | 2 |
c13three | 3 |
c13four | 4 |
} |
SEQUENCE | { |
parent | VisibleString |
product | VisibleString OPTIONAL |
} |
SEQUENCE | { |
neutralloss | MSIonNeutralLoss OPTIONAL |
isotope | MSIonIsotopicType OPTIONAL |
internal | VisibleString OPTIONAL |
immonium | MSImmonium OPTIONAL |
} |
SEQUENCE | { |
suspect | BOOLEAN OPTIONAL |
massdiff | REAL OPTIONAL |
missingisotope | BOOLEAN OPTIONAL |
} |
SEQUENCE | { |
ion | MSIonType |
charge | INTEGER |
number | INTEGER |
mz | INTEGER |
index | INTEGER OPTIONAL |
moreion | MSIon OPTIONAL |
annotation | MSIonAnnot OPTIONAL |
} |
SEQUENCE | { |
start | INTEGER |
stop | INTEGER |
gi | INTEGER OPTIONAL |
accession | VisibleString OPTIONAL |
defline | VisibleString OPTIONAL |
protlength | INTEGER OPTIONAL |
oid | INTEGER OPTIONAL |
reversed | BOOLEAN OPTIONAL |
pepstart | VisibleString OPTIONAL |
pepstop | VisibleString OPTIONAL |
} |
SEQUENCE | { |
site | INTEGER |
modtype | MSMod |
} |
SEQUENCE | { |
name | VisibleString |
value | REAL |
} |
SEQUENCE | { |
evalue | REAL |
pvalue | REAL |
charge | INTEGER |
pephits | SEQUENCE OF MSPepHit |
mzhits | SEQUENCE OF MSMZHit OPTIONAL |
pepstring | VisibleString OPTIONAL |
mass | INTEGER OPTIONAL |
mods | SEQUENCE OF MSModHit OPTIONAL |
pepstart | VisibleString OPTIONAL |
pepstop | VisibleString OPTIONAL |
protlength | INTEGER OPTIONAL |
theomass | INTEGER OPTIONAL |
oid | INTEGER OPTIONAL |
scores | SEQUENCE OF MSScoreSet OPTIONAL |
libaccession | VisibleString OPTIONAL |
} |
INTEGER | { |
none | 0 |
generalerr | 1 |
unable2read | 2 |
notenuffpeaks | 3 |
} |
INTEGER | { |
none | 0 |
delete | 1 |
flag | 2 |
} |
SEQUENCE | { |
number | INTEGER |
error | MSHitError OPTIONAL |
hits | SEQUENCE OF MSHits OPTIONAL |
ids | SEQUENCE OF VisibleString OPTIONAL |
namevalue | SEQUENCE OF NameValue OPTIONAL |
settingid | INTEGER OPTIONAL |
userannotation | MSUserAnnot OPTIONAL |
} |
INTEGER | { |
none | 0 |
generalerr | 1 |
noblastdb | 2 |
noinput | 3 |
} |
SEQUENCE | { |
oid | INTEGER |
seq | Bioseq |
} |
SEQUENCE | { |
hitsets | SEQUENCE OF MSHitSet |
scale | INTEGER DEFAULT 100 |
rid | VisibleString OPTIONAL |
error | MSResponseError OPTIONAL |
version | VisibleString OPTIONAL |
VisibleString OPTIONAL | |
dbversion | INTEGER OPTIONAL |
bioseqs | MSBioseqSet OPTIONAL |
} |
SEQUENCE | { |
request | SEQUENCE OF MSRequest OPTIONAL |
response | SEQUENCE OF MSResponse OPTIONAL |
} |