LOCUS AJ303056 624 bp genomic DNA linear MAM 11-JAN-2001 DEFINITION Elephas maximus mitochondrial partial cyt b gene for cytochrome b, tRNA-thr gene and tRNA-pro gene ACCESSION AJ303056 VERSION AJ303056.1 GI:12188903 KEYWORDS cytb gene, cytochrome b, tRNA-Pro gene, tRNA-Thr gene, transfer RNA-Thr. EMBL XREFS GOA:Q9G395; SPTREMBL:Q9G395; SOURCE Mitochondrion Elephas maximus (Asiatic elephant) ORGANISM Elephas maximus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Elephas REFERENCE 1 (bases 1 to 624) AUTHORS Mokady, O. TITLE Direct Submission. JOURNAL Submitted (5-JAN-2001) Mokady O., Institute for Nature Conservation Research, Tel Aviv University, Tel Aviv University, Tel Aviv 69978, ISRAEL REFERENCE 2 AUTHORS Dahary, D., Seifer, R., Yom-Tov, Y., Mokady, O. TITLE Asian elephants from zoos in Israel - examination of the mitochondrial control region, domain I JOURNAL Unpublished. Mokady O., Institute for Nature Conservation Research, Tel Aviv University, Tel Aviv University, Tel Aviv 69978, ISRAEL ORIGIN 624 bp linear >gi|12188903|embl|AJ303056.1| Elephas maximus ACCCCTACACCATTATCGGCCAAATAGCCTCAATTCTATACTTCTCCATTATTCTAGCTT TCCTACCAATTGCAGGAATAATCGAAAACTACCTCATCAAGTAACCCCTATAGTATAAGA CATTACAATGGTCTTGTAAGCCATAAATGAAAACCACTTTCTAAGGGTATTCAGGGAAGA GGTCCACTTACCTCGCTATCAATACCCAAAACTGAGATTCTTCTTAAACTATTCCCTGCA AGTAAATCAATCCGCTATGTACATCGTGCATTAAATGCTCGTCCCCATACATAATGATAT ATAATACTAACTATACTTAATCTTACATAGACCATACTATGTATAATCGTGCATCACATT ATTTACCCCATGCTTATAAGCAAGCACTGTTTAGTCAATGTGTTGAGTCATATTCTTGTA GATTCACAGGTTATGTTTTAGCTCATGGATATTATTCACCTACGATAAACCATAGTCTTA CATAGCACATTAAAGCTCTTGATCGTACATAGCGCATTACTGAGAAATCTCTAGTCATCA TGCATATCACCTCCAACGGTTGTATCTTAACTACCTACCTCCGAGAAACCATCAACCCGC CCATCTTCGTGTCCCTCTTCTCGC FEATURES Location/Qualifiers source 1..624 /organism="Elephas maximus" /genus="Elephas" /species="maximus" /organelle="mitochondrion" /mol_type="genomic DNA" /dbxref="taxon:9783" /sex="female" /tissue-type="liver" /country="Israel" gene 1..104 /gene="cyt b" CDS <1..104 /gene="cyt b" /codon_start="3" /transl_table="2" /db_xref="GOA:Q9G395;" /db_xref="SPTREMBL:Q9G395;" /product="cytochrome b /function="oxidation"" /protein_id="CAC21496.1" /db_xref="GI:12188904" /translation="PYTIIGQMASILYFSIILAFLPIAGMIENYLIK" tRNA 105..173 /note="tRNA-Thr" /note="codons recognized: ACA" /anticodon=(pos:135..137,aa:tRNA-Thr) tRNA 174..238 /note="tRNA-Pro" /note="codons recognized: CCC" /anticodon=(pos:205..207,aa:tRNA-Pro) D-loop 239..>624 /note="control region, domain I" // LOCUS AF132038 3769 bp genomic DNA linear MAM 13-FEB-2004 DEFINITION Sus scrofa beta-defensin 1 precursor (BD-1) gene, complete cds. ACCESSION AF132038 VERSION AF132038.1 GI:5764116 KEYWORDS . SOURCE Sus scrofa (pig) ORGANISM Sus scrofa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus REFERENCE 1 (bases 1 to 3769) AUTHORS Zhang, G., Hiraiwa, H., Yasue, H., Wu, H., Ross, C., Troyer, D., Blecha, F. TITLE Direct Submission. JOURNAL Submitted (27-FEB-1999) Kansas State University, Anatomy and Physiology, Manhattan, KS, USA, 1600 Denision Ave., VMS 228, 66506 REFERENCE 2 (bases 1 to 3769) AUTHORS Zhang, G., Hiraiwa, H., Yasue, H., Wu, H., Ross, C.R., Troyer, D., Blecha, F. TITLE Cloning and characterization of the gene for a new epithelial beta-defensin. Genomic structure, chromosomal localization, and evidence for its constitutive expression. JOURNAL The Journal of biological chemistry. 274 (34) 24031-24037, (1999). PMID 99377035 MUID 10446172 ORIGIN 3769 bp linear >gi|5764116|gb|AF132038.1| Sus scrofa GGGTCTGGATAACTCGGCTAAAGTGATACTATACACTGCCCTGCTTTGTGACACTGAAAC AGGAGGGAAGACCTTAAAAATGACATGGCCCTTGAGGATGTGATAAAATTGGTTAGAATC CATTAGGCCCAAGGTGGTGAAAGGTGCTACTTCCAGGGAACTAGAGCCTCATTATACTCT CATTGTAATAAACCAGCATCTAAGTGACATGCCACAGGGGTCATGACACACCGAAGGCTG ACTGTAAAAGGCCAAAAAGTGGGCAGTGGCCCAATTTCTGGAAATCTCCATCCCTTACCT GATATAGTTAAAATAATCCTCCCATTCATTAGCCTATGAAATTGCCCAGCTCATAAAAAC TCACAATCCCATGTTTCTGGGCCACTGTCTTGCCTTTTCAGATGGATGGCATTCTATCCA TGTAATGTGTATCTTCCAGCCCCCACCCCCCCACCCTCTTTCTCTCTCTCCTGAGATGCC CCACACTCTGTCTCTCTCAATAAATCTACTTCTTAACTATCACTTTGCTGTTTGCTGAAT TCCCTCTGCTCTGAGACATAATGACACTGAACTTCAGTTAAGTTCTGAAACCAGGTGTGA CTCTAATTAAAAGACAATGGGTCCAAGGCCCAATCTGGGATTTGTCTGTGTTAGAGTCCC AGCCCGTGGGCTCAAGTGCCAACCTGAGTTGGGGCGCGGTCAATACAAGACTGAGGACAT GCGTCCAGTCTCATCCCCTCCCATTCTTTGTCAGATGAAAGGACATGGAGCACCTGTCTG CCTCAGCATCTGCCCATTGAGACAATGTAACCTGAGGACACTTTCACCTGAGTGTTCTAT CCTGTGACAACTTAGATGGGGGGGTTGGGCCCATCCTTTCTCTCTCCCCTCAGTGCTCCA AAGCCCCCCGGACCGGGAAGAAAGTGACTGTCTCTAGAGATGCTGGGTTGCAAGCCCTGT TTCACACTCAGGGATGAATTTCTCAGGATGGATTGGTCCGGAGTGTGGCCTGAGACAATC CCAAACTCTCAGGGAAAATCAACATTGGGAAGATTCCAGTTCCAGGGGCAGGCAAAGGAG CACAAAAAAGGCTGTCCCCATGGAGACAGGTCCTGCCCCTCACCCCACCCCTGCCCCATC AGCTGAGCTGAGTGACAGGAAGAAGTTTCTGGCACCAAGGGCAGGAGGAGAGATTTTCTG GAGTTTTCCATGCTTTGATTAGCACAGGGGTGACTAAGCATGCTTTGTGTTTGAAAGACC GTTTCCATGACACACAGGGAGGGAAGAGGCTCAGTCAGTGGCTCTGTAATTTCCAAAGCT GCAGCCAGTACTGAGTTCTCCCAGGAACCTGGAACCTTTATAAAGTCCTCTCCAGTCTCC ACTGTGGTAAAGCTCACCAGCCACCAGCATGAGACTCCACCGCCTCCTCCTTGTATTCCT CCTCATGGTCCTGTTACCTGTGCCAGGTAAGTCCATCCCTGGAAGCAGGAGGTCAAACAG GTGAAAAGGGTAAGACAGCCTCTCTCTCCTATCTCTCCCTTTGTCTGTCCCTCTTCTCTT GTCTGCATGCAATCAAATGAAATAAAGTGTGTGAATTGCTTCTGCGAATTTAGCAGTGCA CCCTAAGCCTGGAAAGAGTCTAAGAACTTTACCGCACAATCCATAGCCCTTCCCCAGCCC CTCAGATGGGGCCGACAGCATATCTCCTCACTGTTTCTCATGTGGAGGCTGAGGTAGAAC AAAGGAAGCCTCTGTTAGGCCGCTCTTCTTCTTAATAAAGATGAGAAATTTGATTTTGTC CAAGGACAGAAGTGCAGAACATTGTGTTACAAGTCCTTCAGCTCCTCAGCTGGGAGGCAG CTGTTCCAAAGCAGTCTTCAAAATTGGATGCCTTGGAGCTCCTGTTGTGGCTTAGTGGGT TATGAAGTATCCATGTAACCGACTAGTATCCGACTTGTATCCATGAGGCTGTGGCCTCGT TCAGTGGGTTAAGGATCTGGTGTTGTGAGCTGTGGTATAGGTCACAGACGAGGCTTGGAT CCCGCGTTGCTGTGGCTGTGGTGTAGGCTGGAAGCTGCAGCTCTAGATTTGACCCCTAGC CCCGCGTTGCTGTGGCTGTGGTGTAGGCTGGAAGCTGCAGCTCTAGATTTGACCCCTAGC CTGGGAACTTTTTAGGTGAAATCCTAAAAAGAAAAAAATATTGGATGCTTTGTTTTCATT TTATCCTTGGTCTTTATGGAAATAGGATAAAAGGAGGAAGGAAGGAGAGAGAGAAGGAGA GAGGGAATGGGAGGCTGAGACCTGAGATAACTGATTAGATGTTAGACTTTGTATTAAAAA TCCCTTTCTTCATCAATGTTTTAATGGCTATAATCCAATACTTAGAACAGAAGCAGGGAG GGATGGGGAGGAAAATGATTCAGGAAGACAGGAGTGTAAGGAACGTAAGAAGGAAATCAG GAAGGGAGAGGGGCTCTGACATCCAGACCAGAGCTGAGAGAATTCTGAGATATTCAAGAC AATACTACAAAAGTCTTTTTTTCTTAACCATTATTATTTTTTATTATAAGTTACTTTGAT ATTAAATTCTTTTAAAGCAATTTTACACTTTCAGCTGCATCTTTTCCCTCCATCTCAGCT CAAAGACTTGATCCATAAAATGAGTTGGAAAATATAATGCTAAAAACAGACATCTGCTGA CTATGTCTGATTCTGAGACTGCTGGCATGTTGTGAAAATTGGTGCAGCATTGTTTTGAGG GGGTCTCTGCTGTCCTAGTGGAGCTGACCATACACAGAACCTTCATCACACCCCAGTCCC TCAGCCACACACCTTCAATCTTTTGGTTCTAGCAACATGAGGATCCAGGGACACCTTGCA AAGCCAGTCTCTGTCTGAAAGCTGGACCCTGGTCATCCCAGACTTGTGTCTCATCGTGAT GGCATAACCACAGGCTTGGGAGAGAAGCCCCCTGGGATTCACTCAAAGGGAACACGGTTT GCCTTTCTGAGATGGTGCTTTTATTTCTGACACTCTGTTGCCTTATTCATTTTCTTTTTA GGTCTACTAAAAAACATAGGAAATTCTGTTAGCTGCTTAAGGAATAAAGGCGTGTGTATG CCGGGCAAGTGTGCTCCAAAGATGAAACAGATCGGCACCTGTGGCATGCCCCAAGTCAAA TGCTGCAAAAGGAAGTAAAAAGAAAGTGAAGAAACAACCCCACAGATATGGCTCAGAAGC TGCTCCCTTGGAAAAGCATATAAAATTTAAACTAGATTAAATCTTTGTTCAAGGCAAAGA CACTTGCCCTCTGGTAATTTGGTCATTGTGTGGTGTCTGATCCTCAAAGGTGCTTTTTTT AGGTTCCCATACTAGCCAGCAGGGACCCCACTAGGGGACACCCCTGTTCTTTCTGCTTTC TGGTCCCCAGTTCTTCCCTGTGCTGTCCTATAACTTATGTTTATTCTACTTGCTTCCTGC TCAGCAAGTCCTTACCTGCCCCCATTACTCCCCAAACACCCCCACCCCATTGGTCCAGTC CCACTGGACCACTACCTTCCTCAGGTACCACCACTGATCCTCCTCTGTCCCCCCAAGTCC TCACTTCCTTTCCGTTTATGCTTCTTACTCACTCGTGCCTTGTGCATATGTGGAAAAACT TCTGATTCTCTGTTGGGCTCTAAGATCCTCATGAGTAGGGGCTTTGTCCTGTTCATTTAT GTGCTGCCCACTGAGGGGAGACATTGCTGCATAAATCATCATCAATGGAATGGTGAGATT GAGTTGGACAAATGTGTCTTCCTGTGTGGACGTGATATGATCGAAGGAA FEATURES Location/Qualifiers source 1..3769 /organism="Sus scrofa" /genus="Sus" /species="scrofa" /mol_type="genomic DNA" /dbxref="taxon:9823" /chromosome="15" /map="15q14-q15.1" gene 1359..3235 /gene="BD-1" mRNA join(1395..1466, 3002..3235) /gene="BD-1" /note="beta-defensin 1 precursor" CDS join(1409..1466, 3002..3138) /gene="BD-1" /codon_start="1" /note="epithelial antimicrobial protein" /product="beta-defensin 1 proprotein" /protein_id="AAD51137.1" /db_xref="GI:5764117" /translation="MRLHRLLLVFLLMVLLPVPGLLKNIGNSVSCLRNKGVCMPGKCAPKMKQIGTCGMPQVKCCKRK" TATA_signal 1359..1408 /gene="BD-1" 5'UTR 1395..1408 /gene="BD-1" 3'UTR 3139..3235 /gene="BD-1" sig-peptide Located on GI:5764117 at 1..20 /note="epithelial antimicrobial protein" mat-peptide Located on GI:5764117 at 23..64 /product="beta-defensin 1" preprotein Located on GI:5764117 at 21..64 /product="beta-defensin 1 proprotein" // SEGMENTED SEQUENCE LOCUS AH004822 63 bp peptide linear MAM 1-APR-1996 DEFINITION endothelin B receptor [Bos taurus] ACCESSION AH004822 VERSION AH004822.1 GI:1683587 3 SEGMENTS AAB35802.1 GI:1246007; AAB35803.1 GI:1246008; AAB35804.1 GI:1246009; KEYWORDS . SOURCE Bos taurus (cow) ORGANISM Bos taurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos REFERENCE 1 (bases 1 to 63) AUTHORS Hick, S., Heidemann, I., Soskic, V., Muller-Esterl, W., Godovac-Zimmermann, J. TITLE Isolation of the endothelin B receptor from bovine lung. Structure, signal sequence, and binding site. JOURNAL European journal of biochemistry / FEBS. 234 (1) 251-257, (1995). PMID 96096746 MUID 8529649 SEGMENTS DATA source 1..63 /mol_type="peptide" /organism="Bos taurus" /genus="Bos" /species="taurus" /mol_type="genomic DNA" /dbxref="taxon:9913" SEGMENT 1 OF 3 LOCUS AAB35802 18 bp peptide linear DEFINITION endothelin B receptor {N-terminal} [cattle, lung, Peptide Partial, 18 aa, segment 1 of 2] ACCESSION AAB35802 VERSION AAB35802.1 GI:1246007 ORIGIN 18 bp linear >gi|1246007|AAB35802.1| endothelin B receptor {N-terminal} [cattle, lung, Peptide Partial, 18 aa, segment 1 of 2] QAEEREFPPAGATQPLPGQAEEREFPPAGATQPLPG SEGMENT 2 OF 3 VIRTUAL SEQUENCE - AAB35803.1 GI: 1246008 30 bp. No Sequence Data Available. SEGMENT 3 OF 3 LOCUS AAB35804 15 bp peptide linear DEFINITION endothelin B receptor {N-terminal} [cattle, lung, Peptide Partial, 15 aa, segment 2 of 2] ACCESSION AAB35804 VERSION AAB35804.1 GI:1246009 ORIGIN 15 bp linear >gi|1246009|AAB35804.1| endothelin B receptor {N-terminal} [cattle, lung, Peptide Partial, 15 aa, segment 2 of 2] PRGGRMAGIPPRTPPPRGGRMAGIPPRTPP SEGMENTS FEATURES Location/Qualifier Protein join(1246007:1..18; 1246008: 1..30; 1246009: 1..15) /product="endothelin B receptor" /note="chloride channel ClC-2G isoform" // SEGMENTED SEQUENCE LOCUS AH006098 414 bp genomic DNA linear DEFINITION Sus scrofa inter-alpha-trypsin inhibitor heavy-chain H1 (ITIH1) and inter-alpha-trypsin inhibitor heavy-chain H1 (ITIH1) genes, partial cds. ACCESSION AH006098 VERSION AH006098.1 GI:3098476 2 SEGMENTS AF041028.1 GI:3098474; AF041029.1 GI:3098475; KEYWORDS . SOURCE Sus scrofa (pig) ORGANISM Sus scrofa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Cetartiodactyla; Suina; Suidae; Sus REFERENCE 1 (bases 1 to 414) AUTHORS Van Poucke, M., Peelman, L.J. TITLE Direct Submission. JOURNAL Submitted (6-JAN-1998) University of Ghent, Animal Genetics, Merelbeke, Belgium, Heidestraat 19, 9820 REFERENCE 2 (bases 1 to 414) AUTHORS Van Poucke, M., Tornsten, A., Mattheeuws, M., Van Zeveren, A., Peelman, L.J., Chowdhary, B.P. TITLE Comparative mapping between human chromosome 3 and porcine chromosome 13. JOURNAL Cytogenetics and cell genetics. 85 (3-4) 279-284, (1999). PMID 99380101 MUID 10449918 COMMENT Method: conceptual-translation SEGMENTS DATA source 1..414 /mol_type="genomic DNA" /organism="Sus scrofa" /genus="Sus" /species="scrofa" /mol_type="genomic DNA" /dbxref="taxon:9823" /chromosome="13" /map="13q21-q22" /strain="Belgian Landrace" SEGMENT 1 OF 2 LOCUS AF041028 236 bp genomic linear DEFINITIONACCESSION AF041028 VERSION AF041028.1 GI:3098474 ORIGIN 236 bp linear >gi|3098474|AF041028.1| Sus scrofa inter-alpha-trypsin inhibitor heavy-chain H1 (ITIH1) gene, exon 7 and partial cds. GCATGTAAACCATGTTAGGGAGTCCCCNTGGNTGGTTTTAGTTGCTAAAGGATCTGAAGT TGCTCTGCTGTAGCACGGGTTCAATTTCTGGCTTGGGAATTTCCCCACACTGTGGGCACG CCCCCCGCAAATGTCACTGCAGACCAGTAATGTTCCTCACCCTCGATGGTTCCAGGGTCA TGTGCTTTTCCGCCCCACGGTGGGCCAGCAACAATCCTGCTCCACATGCTCTACGAGCAT GTAAACCATGTTAGGGAGTCCCCNTGGNTGGTTTTAGTTGCTAAAGGATCTGAAGTTGCT CTGCTGTAGCACGGGTTCAATTTCTGGCTTGGGAATTTCCCCACACTGTGGGCACGCCCC CCGCAAATGTCACTGCAGACCAGTAATGTTCCTCACCCTCGATGGTTCCAGGGTCATGTG CTTTTCCGCCCCACGGTGGGCCAGCAACAATCCTGCTCCACATGCTCTACGA SEGMENT FEATURES Location/Qualifier intron <1..175 Located on GI:3098474. /number="6" exon 176..>236 Located on GI:3098474. /number="7" SEGMENT 2 OF 2 LOCUS AF041029 178 bp genomic linear DEFINITION Sus scrofa inter-alpha-trypsin inhibitor heavy-chain H1 (ITIH1) gene, exon 9 and partial cds. ACCESSION AF041029 VERSION AF041029.1 GI:3098475 ORIGIN 178 bp linear >gi|3098475|AF041029.1| Sus scrofa inter-alpha-trypsin inhibitor heavy-chain H1 (ITIH1) gene, exon 9 and partial cds. TCTGCAGTGCAGTCCTGGAGGGGCTCATTGGTGCAGGCATCCACCGCCAACCTGGACGCA GCTCGGAGTTATGTGCGGCAATTCTCCCTGGCTGGCTGTAAGGGCAGGGGTCTGGGGCCA CCTCGATGTTGCCTCTGTCCCCTCAGGTTGAGGACATACACTGATCTCCTTTCTCTTCTC TGCAGTGCAGTCCTGGAGGGGCTCATTGGTGCAGGCATCCACCGCCAACCTGGACGCAGC TCGGAGTTATGTGCGGCAATTCTCCCTGGCTGGCTGTAAGGGCAGGGGTCTGGGGCCACC TCGATGTTGCCTCTGTCCCCTCAGGTTGAGGACATACACTGATCTCCTTTCTCTTC SEGMENT FEATURES Location/Qualifier Sus scrofa inter-alpha-trypsin inhibitor heavy-chain H1 (ITIH1) gene, exon 7 and partial cds. gene order(3098474:<1..236; 3098475: 1..>178) /gene="ITIH1" mRNA order(3098474:<176..236; 3098475: 1..>97) /gene="ITIH1" /note="inter-alpha-trypsin inhibitor heavy-chain H1" exon <1..97 Located on GI:3098475. /number="9" /gene="ITIH1" intron 98..>178 Located on GI:3098475. /number="9" /gene="ITIH1" SEGMENTS FEATURES Location/Qualifier gene order(3098474:<1..236; 3098475: 1..>178) /gene="ITIH1" mRNA order(3098474:<176..236; 3098475: 1..>97) /gene="ITIH1" /note="inter-alpha-trypsin inhibitor heavy-chain H1" CDS <1..>97 /gene="ITIH1" /codon_start="1" /product="inter-alpha-trypsin inhibitor heavy-chain H1" /protein_id="AAC15664.1" /db_xref="GI:3098478" /translation="SAVQSWRGSLVQASTANLDAARSYVRQFSLAG" intron <1..175 Located on GI:3098474. /number="6" /gene="ITIH1" exon <1..97 Located on GI:3098475. /number="9" /gene="ITIH1" intron 98..>178 Located on GI:3098475. /number="9" /gene="ITIH1" CDS <176..>236 /gene="ITIH1" /codon_start="1" /product="inter-alpha-trypsin inhibitor heavy-chain H1" /protein_id="AAC15663.1" /db_xref="GI:3098477" /translation="GHVLFRPTVGQQQSCSTCST" exon 176..>236 Located on GI:3098474. /number="7" /gene="ITIH1"